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About SPARC
What Can I Do with SPARC?
What is SPARC?
SPARC Mission and Vision
SPARC Portal Roadmap
SPARC Data and Resource Center Cores and Steering Committee
DAT-Core
K-Core
MAP-Core
SIM-Core
DRC Open Office Hours
SPARC and Re3 Data
SPARC Repository for NIH HEAL projects
In Silico Studies Roadmap
Glossary
SPARC Portal Features
SPARC Portal Overview
SPARC Portal Login
Gallery Viewer
Image Viewer
Integrated Maps Viewer
Scaffold Viewer
Segmentation Viewer
Simulation Viewer
Plot Viewer
Organ Scaffolds
SPARC Portal Known Issues
Faceted Browse
Contributing to SPARC
Submit to SPARC
Submission Walkthrough Intro
Create Your Protocol
Prepare Your Metadata Files
Organize Your Files
Upload Your Data
FAQs: SPARC Data Submission
Guidelines for Effective SPARC Dataset Titles and Descriptions
Formatting SPARC Datasets
Uploading Files to the SPARC DAT-Core
User Accounts and Teams
SPARC Portal Data Repository Structure
Embargoed Datasets
Dataset Access Downloads Notification to Dataset Owners
What’s Your SPARC Story?
Using SPARC Datasets
Using SPARC Datasets
Navigating SPARC Datasets
Publishing a Flatmap as a SPARC Dataset
Citing SPARC Datasets in Manuscripts
SPARC Data and Usage Statistics
SPARC Dataset Citations
SPARC Dataset Structure (SDS)
Tutorial: Running a Cardiovascular System Model on o²S²PARC from the SPARC Portal
Tutorial: Running ASCENT On o²S²PARC
Using SPARC Resources
SPARC Python Client
Tutorial: Download public data, scaffolds and run computations
Tutorial: Using sparc.client for data movement in SPARC
Accessing Public Datasets
Accessing SCKAN
Accessing Published o²S²PARC Simulations
Accessing public o²S²PARC Services
Using a Jupyter Notebook with SPARC data
SODA: Software to Organize Data Automatically
SciCrunch Vocabulary Services
Introduction to Maps
Working with Multiple Views in Maps
SPARC Portal annotation tool
How to Use the Sidebar in Maps
Scaffold Mapping Tools
Scaffold Mapping Tools: Installation Guide
Publishing Scaffold Maps as a SPARC Dataset
Scaffold Mapping Tools: Mapping Image Data
Scaffold Mapping Tools: Mapping Physiological Data
Scaffold Mapping Tools: Mapping Image Data From Flat Preparation
Scaffold Mapping Tools: Creating Skeleton Dataset Structure
Scaffold Mapping Tools: Annotation
Scaffold Mapping Tools: Adding Provenance
Scaffold Mapping Tools: Adding Fiducial Marker And Group
Scaffold Mapping Tools: Reusing Scaffolds
Scaffold Mapping Tools: Mapping Image Data v0.19.1
Scaffold Mapping Tools: Mapping Physiological Data v0.19.1
Scaffold Mapping Tools: Mapping Image Data From Flat Preparation v0.19.1
Scaffold Mapping Tools: Mapping Image Data v0.17.4
Documentation, Examples, and Software for SPARC Map Reuse
Anatomical Flatmap Resources
Demo of Use of Segmentation Conversion Tools for Scaffold Mapping
Microfile+: Convert Microscopy Image Data and Metadata to SPARC Standard Formats
Functional Connectivity Map
Video Tutorials and Webinars
SPARC YouTube Channel
SPARC Portal Walkthrough
Intro to the New SPARC 2.0 Dataset Structure
Using AWS to Access Public Datasets
Setting up an AWS Account to Access Large SPARC Datasets
Using the AWS Command Line Interface to Access Large SPARC Datasets
Running JupyterLabs on SPARC Resources
Access o²S²PARC from the SPARC Portal
Webinars
For Developers and Data Analysts
Information for Developers
SPARC Platform Integrations
Connecting MBF Bioscience Software to the Pennsieve Platform
FAIR Image Segmentation in MBF Bioscience Software
SPARC Portal Schema
How to Clean an ORCID Profile
SPARC Systems Status
Supported Browsers
Policies and Standards
SPARC Terms of Service
NIH SPARC Embargoed Data Use Agreement
SPARC Material Sharing Policy
SPARC DRC Privacy Policy
SPARC Governance Regulations
SPARC DRC Operation
SPARC Anatomical Working Group (SAWG)
SPARC Standards Process
Standards
Ontologies
Promotional Resources
SPARC Sustainability Statement
SPARC Data Persistence Policy
SPARC Changes to Published Datasets Policy
List of SPARC Datasets Removed from the SPARC Portal
Feedback
Suggested Edits and Content - DRC Investigators
Suggest Edits and New Content
Access o²S²PARC from the SPARC Portal
Suggest Edits
Updated over 1 year ago