Integrated Maps Viewer

What is the Integrated Maps Viewer?

The Integrated Map Viewer provides the point of entry to the different AC flatmaps.

What can I do with the Integrated Maps Viewer?

The integrated maps viewer can be used to access and interact with:

  • Flatmaps
  • 3D maps
  • Anatomical scaffolds
  • Data
  • Simulations

Access the integrated maps viewer

Learn more about maps and how to access them in the SPARC App's Maps section.

The Display

Flatmap Viewer

The Integrated Maps Viewer's primary interface is the AC Flatmap Viewer. Learn more about how to use it in the AC Flatmap section.

sidebar

What can I do with the integrated maps viewer?

Interact with flatmaps

You can interact with the flatmap itself (Figure 1, 6). learn how to xxx

Open 3D maps

3D maps can be opened from the Open new map tooltip.

Learn how to use 3D Maps in detail

Anatomical Models

Access to anatomical scaffolds can be done either through the flatmap itself or through the sidebar, as illustrated here.


Simulations

Access to simulations is done through the sidebar, as illustrated here.

Access Data & Models


Datasets views

Access to data is done through the sidebar where you can search for datasets that contain data that can be rendered using the Data viewer. For instance, open the sidebar and:

  1. Search for RAGP (i.e. right atrial ganglionic plexus);
  2. Click on the Plots (4) button;
  3. Click on the View Plot button;
  4. Click on the right arrow button and go back to step 3 until you have opened all four plots;
  5. This is how one plot is initially rendered; and
  6. This is how all four plots are eventually rendered using the 4-page view.


Computational Models and Simulations

Access to simulations is done through the sidebar, as illustrated here.


Explore Connectivity

When the Connectivity tab is opened in the sidebar by clicking a neuron on flatmap (e.g., clicking "Neuron type bolew unbranched 10"), the information in the connectivity tab is connected with the sidebar's Search tab and also with the flatmap.

  1. Clicking Explore origin data, Explore destination data, or Search for data on components will switch to the Search tab by applying the connectivity data in filters.
  2. Clicking Show connectivity on map will move the map to show the highlighted area.
  3. Clicking Copy to clipboard button will copy the connectivity information to clipboard.