SPARC Tutorials

General

SPARC Portal Walkthrough (2024)

Computational Models & Simulation

• Using o²S²PARC with SPARC
• Using JupyterLabs with SPARC
• Running a Cardiovascular System Model on o²S²PARC from the SPARC Portal
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Downloading and Accessing Data

• Downloading Datasets with AWS

Scaffold Mapping Tools

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• Mapping Image Data
• Mapping Physiological Data
• Mapping Image Data From Flat Preparation

SCKANNER

SDS

• Intro to SPARC 2.0 Dataset structure

SPARC Python Client

Tutorial: Download public data, scaffolds and run components

Tutorial: Using sparc.client for data movement in SPARC

• More tutorials on the o²S²PARC Python Client are available here

References

In order to learn more about SPARC Python library, please refer the following websites:

• Tutorial in Jupyter Notebook on how to use sparc.client: https://github.com/nih-sparc/sparc.client/blob/main/docs/tutorial.ipynb
• Tutorial in a Jupyter Notebook on how to analyse and export organ scaffolds using sparc.client: https://github.com/nih-sparc/sparc.client/blob/main/docs/tutorial-zinc.ipynb
• GitHub repository with the most current version of sparc.client : https://github.com/nih-sparc/sparc.client
• Code reference for the sparc.client : https://nih-sparc.github.io/sparc.client/sparc.client.html
• Uploading files to SPARC Portal (requires: Pennsieve Agent): https://docs.pennsieve.io/docs/uploading-files-programmatically .
• Guide for contributors: https://github.com/nih-sparc/sparc.client#readme