Scaffold Viewer
The scaffold viewer can be used to visualize datasets that are registered to an anatomical scaffold.
Some datasets are registered to an anatomical scaffold, i.e. a 3D model of some anatomy of interest. Such datasets can be viewed using the scaffold viewer, either via the Find Data
tab or via the Maps
tab.
Access the scaffold viewer via the Find Data
tab
Find Data
tabFrom the SPARC homepage
- Click on the
Find Data
tab or search for a dataset using theSearch
field (this will open the page below); - Click on the
Anatomical Models
button; and - Click on the
Generic pig heart scaffold
dataset.
Clicking on the Generic pig heart scaffold
dataset will open a new page (see below):
- Click on the
View Scaffold
button (this will show theGallery
tab) or simply on theGallery
tab; and - Click on the (second)
View Scaffold
button.
Clicking on the (second) View Scaffold
button will open a final page with the integrated maps viewer on it and with the scaffold viewer within it (see below). After collapsing the sidebar, you can:
- Interact with the scaffold itself;
- Decide which regions to show / hide;
- Change the background color; and
- Zoom in / out and reset the zoom level (you can also do so using your mouse).
Access the scaffold viewer via the Maps
tab
Maps
tabFrom the SPARC homepage
- Click on the
Maps
tab (this will open the page below); - Click on the button to expand the sidebar;
- Search for a dataset using the
Search
field (here, we usestomach
as a search term) and click on theSearch
button (this will list all the datasets that match your search term(s)); - Filter the results using
Scaffold
as a data type; - Click on the right arrow button until you see the scaffold data type or ask for only scaffold data types to be shown; and
- Click on the
View Scaffold
button.
Clicking on the View Scaffold
button will open the scaffold viewer and offer the same interface as above:
Updated 7 months ago