Create your own Flatmap

Overview

Flatmaps and their componenets

Flatmap Resources

Mapmaker

SCKAN

ApiNATOMY

Map-tools

Connectivity Knowledge

SPARC Connectivity Knowledge Base of the Autonomic Nervous System (SCKAN)

Learn more about SCKAN from its documentation page.

The map knowledge package provides a Python wrapper for flatmap-related SCKAN queries, and an additional package, map tools, allows SCKAN connectivity to be viewed and explored in a Jupyter notebook.

ApiNATOMY

SCKAN knowledge is based on various ApiNATOMY models set up by SPARC investigators and the Neuron Phenotype Ontology. For more information on ApiNATOMY, visit the SPARC SAWG site. The ApiNATOMY models can be accessed via the github repository.

Simply clone the repository.

$ git clone https://github.com/open-physiology/apinatomy-models

Navigate to the desired model in the models folder. Each model can be found in the docs folder, in the form of .svg and .pdf files.