MAP Tools Resource Page

Flatmap maker

Map maker’s source code is hosted on GitHub, which is where issues and feature requests can be raised, and documentation can be found here.

Connectivity knowledge from SCKAN is used to identify which segments of a pre-drawn (but hidden) nerve network that the path of each neuron population group traverses. These paths are then ordered within each nerve segment to minimize the number of crossings between paths, and drawn using an offset from the segment’s centreline.

Releases are versioned in GitHub.

Flatmap server

The flatmap server’s source code is hosted on Github, which is where issues and feature requests can be raised and flatmap server documentation can be found here.

PMR’s Exposure Creation Wizard (see Publishing a Flatmap as a SPARC Dataset).

Databases

The map knowledge package provides a Python wrapper for flatmap-related SCKAN queries, and an additional package, map tools, allows SCKAN connectivity to be viewed and explored in a Jupyter notebook.