AC Flatmap Viewer
Anatomical Connectivity (AC) FlatmapVuer
Flatmap Viewer
The flatmap viewer consists of a zoomable map that includes various anatomical features associated with a particular species (human male, by default). From the flatmap viewer, you can:
- Change the species of interest (
Human Female
,Human Male
,Rat
,Mouse
,Pig
, andCat
; note that all flatmaps are currently showing beta connectivity features); - Search for a particular anatomical feature;
- Either:
- Split / rearrange the different views;
- Open help mode to see tooltips with information about each feature on the map;
- Toggle the fullscreen mode; and
- Get a permalink for the current view(s).
- Show information of the Map;
- Use the minimap to navigate the (zoomed-in) flatmap;
- Interact with the flatmap itself;
- Show / hide the sidebar (where you can search for specific datasets);
- Decide which neural pathways to show / hide;
- Open new map; it can be
AC Map
,FC Map
,3D Human Map
, orSync Map
;
(Open Sync Map
will open a 3D map viewer in split screen as shown here) - Change the background color, viewing mode, flight path display (2D/3D), the way organs are rendered; and
- Zoom in / out and reset the zoom level (you can also do so using your mouse).

- Switch to 3D on the flight path display and use mouse right-click to rotate the 3D map.

Interacting with the Flatmap
From a flatmap, you can:
- Click on a given marker or a feature dataset marker (e.g., the
Pancreas
marker) to open the sidebar and show all the datasets related to it (e.g., 3 datasets are related to the pancreas; note that this hides all the other markers which can be shown back by removing the filtering in the sidebar); - Select a specific anatomical feature (e.g., the brainstem); and
- Select a particular neuron or group of neurons (e.g., the Neuron type aacar 13) to show neuron and connectivity information in the sidebar.


AC Map Interface Controls

Maps Interface Controls
Updated 8 days ago