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About SPARC

  • What Can I Do with SPARC?
  • What is SPARC?
    • SPARC Mission and Vision
    • SPARC Portal Roadmap
    • SPARC Data and Resource Center Cores and Steering Committee
    • DAT-Core
    • K-Core
    • MAP-Core
    • SIM-Core
    • DRC Open Office Hours
    • SPARC and Re3 Data
  • In Silico Studies Roadmap
  • Glossary

SPARC Portal Features

  • SPARC Portal Overview
  • SPARC Portal Login
  • Gallery Viewer
  • Image Viewer
  • Integrated Maps Viewer
  • Scaffold Viewer
  • Segmentation Viewer
  • Simulation Viewer
  • Plot Viewer
  • Organ Scaffolds
  • Portal Release Notes
  • Supported Browsers
  • Faceted Browse

Contributing to SPARC

  • Submit a Dataset to SPARC
  • Data Submission Walkthrough Intro
    • Create Your Protocol
    • Prepare Your Metadata Files
    • Organize Your Files
    • Upload Your Data
  • Guidelines for Effective SPARC Dataset Titles and Descriptions
  • Formatting SPARC Datasets
  • Uploading Files to the SPARC DAT-Core
  • User Accounts and Teams
  • SPARC Portal Data Repository Structure
  • Embargoed Datasets
  • Dataset Access Downloads Notification to Dataset Owners
  • What’s Your SPARC Story?

Using SPARC Datasets

  • Using SPARC Datasets
  • Navigating SPARC Datasets
  • Publishing a Flatmap as a SPARC Dataset
  • Citing SPARC Datasets in Manuscripts
  • SPARC Data and Usage Statistics
  • SPARC Dataset Citations
  • SPARC Dataset Structure (SDS)

Using SPARC Resources

  • Accessing Public Datasets
  • Accessing SCKAN
  • Accessing Published o²S²PARC Simulations
  • Using a Jupyter Notebook with SPARC data
  • SODA: Software to Organize Data Automatically
  • SciCrunch Vocabulary Services
  • Introduction to Maps
  • Working with Multiple Views in Maps
  • How to Use the Sidebar in Maps
  • Scaffold Mapping Tools
  • Scaffold Mapping Tools: Installation Guide
  • Scaffold Mapping Tools: Mapping Image Data Demonstration Overview
  • Scaffold Mapping Tools: Mapping Image Data Creating the Dataset Structure
  • Scaffold Mapping Tools: Mapping Image Data
  • Scaffold Mapping Tools: Mapping Physiological Data
  • Scaffold Mapping Tools: Mapping Image Data From Flat Preparation
  • Scaffold Mapping Tools: Annotation
  • Scaffold Mapping Tools: Adding Provenance
  • Documentation, Examples, and Software for SPARC Map Reuse
    • Anatomical Flatmap Resources
  • Demo of Use of Segmentation Conversion Tools for Scaffold Mapping
  • Microfile+: Convert Microscopy Image Data and Metadata to SPARC Standard Formats

Video Tutorials and Webinars

  • SPARC YouTube Channel
  • SPARC Portal Walkthrough
  • Intro to the New SPARC 2.0 Dataset Structure
  • Using AWS to Access Public Datasets
    • Setting up an AWS Account to Access Large SPARC Datasets
    • Using the AWS Command Line Interface to Access Large SPARC Datasets
  • Running JupyterLabs on SPARC Resources
  • Access o²S²PARC from the SPARC Portal
  • Webinars

For Developers and Data Analysts

  • Information for Developers
  • SPARC Platform Integrations
  • Connecting MBF Bioscience Software to the Pennsieve Platform
  • FAIR Image Segmentation in MBF Bioscience Software
  • How to Clean an ORCID Profile
  • SPARC Systems Status

Policies and Standards

  • SPARC Terms of Service
  • NIH SPARC Embargoed Data Use Agreement
  • SPARC Material Sharing Policy
  • SPARC DRC Privacy Policy
  • SPARC Governance Regulations
  • SPARC DRC Operation
  • SPARC Anatomical Working Group (SAWG)
  • SPARC Standards Process
  • Standards
  • Ontologies
  • Promotional Resources
  • SPARC Data Persistence Policy
  • SPARC Changes to Published Datasets Policy
    • List of SPARC Datasets Removed from the SPARC Portal

Feedback

  • Suggested Edits and Content - DRC Investigators
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Updated 7 months ago


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The NIH Common Fund’s Stimulating Peripheral Activity to Relieve Conditions (SPARC) program aims to transform our understanding of nerve-organ interactions with the intent of advancing bioelectronic medicine towards treatments that change lives.

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