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Access o²S²PARC from the SPARC Portal
These docs are for v1.0. Click to read the latest docs for v6.0.
About SPARC
What Can I Do with SPARC?
What is SPARC?
SPARC Portal Roadmap
SPARC Data and Resource Center Cores and Steering Committee
DAT-Core
K-Core
MAP-Core
SIM-Core
Key o²S²PARC features
DRC Open Office Hours
SPARC and Re3 Data
HEAL Initiative data on SPARC
In Silico Studies Roadmap
Glossary
Is SPARC HIPAA compliant?
SPARC Portal Features
SPARC Portal Overview
SPARC Portal Login
Gallery Viewer
Image Viewer
Integrated Maps Viewer
Scaffold Viewer
Segmentation Viewer
Simulation Viewer
Plot Viewer
Organ Scaffolds
Faceted Browse
SPARC Portal Known Issues
Contributing to SPARC
Submit to SPARC
SPARC Portal Data Repository Structure
Submission Walkthrough Intro
Create Your Protocol
Prepare Your Metadata Files
Prepare The Metadata File for Computational Datasets
Organize Your Files
Upload Your Data
FAQs: SPARC Data Submission
Guidelines for Effective SPARC Dataset Titles and Descriptions
Formatting SPARC Datasets
Uploading Files to the SPARC DAT-Core
User Accounts and Teams
Embargoed Datasets
Dataset Access Downloads Notification to Dataset Owners
What’s Your SPARC Story?
Data Sharing and Management Costs for NIH Grant Proposals
Publishing costs for the SPARC Portal
Using SPARC Datasets
Using SPARC Datasets
Navigating SPARC Datasets
Publishing a Flatmap as a SPARC Dataset
Citing SPARC Datasets and Models in Manuscripts
Citing a Dataset from the Manifest JSON file
SPARC Data and Usage Statistics
SPARC Dataset Citations
Tutorial: Running a Cardiovascular System Model on o²S²PARC from the SPARC Portal
Tutorial: Running ASCENT On o²S²PARC
Tutorial: Introduction To CAD Modeling On o²S²PARC
Tutorial: Running a MetaModeling Pipeline On o²S²PARC
Using SPARC Resources
SPARC Python Client
Tutorial: Download public data, scaffolds and run computations
Tutorial: Using sparc.client for data movement in SPARC
Accessing Public Datasets
Accessing SCKAN
Accessing Published o²S²PARC Simulations
Accessing public o²S²PARC Services
Using a Jupyter Notebook with SPARC data
SODA: Software to Organize Data Automatically
SciCrunch Vocabulary Services
SCKANNER
SCKANNER Tutorial
Introduction to Maps
Working with Multiple Views in Maps
SPARC Portal Map Annotation Tool
Tutorial: SPARC Portal Map Annotation Tool
How to Use the Sidebar in Maps
Scaffold Mapping Tools
Scaffold Mapping Tools: Installation Guide
Publishing Generic Organ Scaffold as a SPARC Dataset
Publishing Scaffold Maps as a SPARC Dataset
Tutorial: Scaffold Mapping Tools: Mapping Image Data
Tutorial: Scaffold Mapping Tools: Mapping Physiological Data
Tutorial: Scaffold Mapping Tools: Mapping Image Data From Flat Preparation
Scaffold Mapping Tools: Creating Skeleton Dataset Structure
Scaffold Mapping Tools: Annotation
Scaffold Mapping Tools: Adding Provenance
Scaffold Mapping Tools: Adding Fiducial Marker And Group
Scaffold Mapping Tools: Reusing Scaffolds
Tutorial: Scaffold Mapping Tools: Mapping Image Data v0.21.4
Scaffold Mapping Tools: Mapping Image Data v0.19.1
Scaffold Mapping Tools: Mapping Physiological Data v0.19.1
Scaffold Mapping Tools: Mapping Image Data From Flat Preparation v0.19.1
Scaffold Mapping Tools: Mapping Image Data v0.17.4
Documentation, Examples, and Software for SPARC Map Reuse
Anatomical Flatmap Resources
Tutorial: Discovering and reusing connectivity knowledge in flatmaps
Demo of Use of Segmentation Conversion Tools for Scaffold Mapping
Microfile+: Convert Microscopy Image Data and Metadata to SPARC Standard Formats
Functional Connectivity Map
SPARC Open Dataset Structure
Video Tutorials and Webinars
SPARC YouTube Channel
SPARC Portal Walkthrough
Intro to the New SPARC 2.0 Dataset Structure
Using AWS to Access Public Datasets
Setting up an AWS Account to Access Large SPARC Datasets
Using the AWS Command Line Interface to Access Large SPARC Datasets
Running JupyterLabs on SPARC Resources
Access o²S²PARC from the SPARC Portal
Mapping Data To Organ Scaffold
SPARC Webinars
For Developers and Data Analysts
Information for Developers
SPARC Platform Integrations
SPARC APIs and Open Access Code
Connecting MBF Bioscience Software to the Pennsieve Platform
FAIR Image Segmentation in MBF Bioscience Software
SPARC Portal Schema
How to Clean an ORCID Profile
SPARC Systems Status
Supported Browsers
Policies and Standards
SPARC Terms of Service
NIH SPARC Embargoed Data Use Agreement
SPARC Dataset Structure (SDS)
SPARC Material Sharing Policy
SPARC Standards Process (NEW 2024)
SPARC DRC Privacy Policy
SPARC Governance Regulations
SPARC DRC Operation
SPARC Anatomical Working Group (SAWG)
Standards
Ontologies
Promotional Resources
Sustainable SPARC
SPARC Data Persistence Policy
SPARC Changes to Published Datasets Policy
List of SPARC Datasets Removed from the SPARC Portal
File Formats Accepted by SPARC
Notice Regarding Repository Review in Response to Executive Order 14168
Feedback
Suggest Edits and Content - DRC Investigators
Suggest Edits and New Content - Visitors
Newsletter
SPARC Plug Newsletter Archive
SPARC Plug Winter 2025
SPARC Plug Autumn 2024
SPARC Plug Summer 2024
SPARC Plug Spring 2024
SPARC Plug Winter 2024
SPARC Plug Autumn 2023
SPARC Plug Summer 2023
SPARC Plug Spring 2023
SPARC is now an Open Data Repository
SPARC Plug Autumn 2022
SPARC hits major dataset milestone
SPARC Plug Spring 2022
SPARC Plug Winter 2022
SPARC Plug Summer 2021
SPARC Plug Winter 2021
SPARC Plug Autumn 2020
Supported Consortia
NIH RE-JOIN Resource Page
NIH PRECISION Human Pain Network Resource Page
SPARC Resources List
Access o²S²PARC from the SPARC Portal
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